About Citizizen Science

This blog is a summary of various news items and pointers on how scientific research is being transformed by new web 2.0 tools, web services and Service Oriented Architectures (SOA). Not only will this transform science through the development of cyber-infrastructure and eSceince but it will enable greater participation by students and the general public in the scientific process in the analysis of data and control of instruments

Monday, January 25, 2010

Tom Friedman on innovation and National Lab Day

From: Ed Lazowska 'Tom Friedman on innovation and National Lab
Day'

Tom Friedman has a wonderful op-ed in today's New York Times. http://www.nytimes.com/2010/01/24/opinion/24friedman.html


Then go to the National Lab Day website, and register!
http://www.nationallabday.org/

"What the country needs most now is not more government stimulus, but more
stimulation. We need to get millions of American kids, not just the geniuses,
excited about innovation and entrepreneurship [...]

Introduced last November by a coalition of educators and science and engineering associations, Lab Day aims to inspire a wave of future innovators, by pairing veteran scientists and engineers with students in grades K-12 to inspire thousands of hands-on science projects around the country.

Any teacher in America, explains the entrepreneur Jack Hidary, the chairman of N.L.D., can go to the Web site NationalLabDay.org and enter the science project he or she is interested in teaching, or get an idea for one. N.L.D. will match teachers with volunteer scientists and engineers in their areas for mentoring.

“As soon as you have a match, the scientists and the students communicate directly or via Skype and collaborate on a project,” said Hidary. “We have a class in Chicago asking for civil engineers to teach them how to build a bridge. In Idaho, a class is asking for a scientist to help them build a working river delta inside their classroom.”
[...]

You may view the latest post at
http://www.cccblog.org/2010/01/24/tom-friedman-on-innovation-and-national-lab-day/

Wednesday, October 14, 2009

Anthony Doesburg: Idle time put to work, all in the cause of science

http://www.nzherald.co.nz/business/news/article.cfm?c_id=3&objectid=10602226

....in a field referred to as cyberscience, a subset of what has come to be called citizen science. To Bill St Arnaud, head of research at CANARIE, a high-speed network connecting 50,000 Canadian researchers, citizen science is a way of democratising science.

It has echoes of another internet-borne phenomenon, citizen journalism, the idea of members of the public reporting news from their communities without the filters of the corporate media.

Citizen science, however, is not about second-guessing the work of scientists, but can contribute to their efforts by giving them many sets of eyes with which to make observations and measurements, and by lending them computer power.

[...]

Monday, October 5, 2009

Community Remote Sensing and Citizen Science

[Here is a great concept that integrates citizen science, cyber-infrastructure and web 2.0 tools -- BSA]

Community Remote Sensing
http://www.igarss2010.org/CommunityRemoteSensing.asp

What is Community Remote Sensing?

Remote sensing is the sensing or collection of information ‘from a distance’. Community remote sensing is a new field that combines remote sensing with citizen science, social networks, and crowd-sourcing to enhance the data obtained from traditional sources. It includes the collection, calibration, analysis, communication, or application of remotely sensed information by these community means.

The Earth information needs of our society are vast. Until now, we have relied on government-sponsored satellites and observing systems as the foundation for this information. The rapid emergence of citizen science and social networks introduces an exciting new means for augmenting this knowledge.

The Vision for Community Remote Sensing

Information technologies will provide the foundation for society’s rapid progress in the 21st century. Information about the environment (both natural and human-built) is central to this progress. The enormity of the required undertaking – observing and understanding our world at all space and time scales – takes your breath away.

Accomplishing it will be enabled in part by citizens who contribute to ‘remotely sensed’ versions of the world around them. Governments will depend on such information to understand local details of climate change and respond to natural disasters. The private sector will use it to build online maps and virtual worlds that make commerce more efficient and accessible. Within just a decade or so, the influence of community remote sensing will be as profound for understanding our Earth as the satellite revolution has been over the last five decades.

If you are working in this area, your participation in the Collaboration will benefit both your project and the greater community. Further information, including a detailed description of the Collaboration, can be obtained from the Conference Plenary Chair Bill Gail (plenarychair@igarss2010.org, 1.303.513.5474). Limited funding may be available to help support selected projects.


An International Community Remote Sensing Collaboration

The Organizing Committee of the 2010 IEEE International Geoscience and Remote Sensing Symposium (IGARSS) is sponsoring a novel project exploring the emerging field of community remote sensing and invites your participation.

IGARSS 2010 will spotlight this emerging field with a plenary session entirely dedicated to the topic, supporting the conference theme “Remote Sensing: Global Vision for Local Action”. During the year leading up to the plenary, the Organizing Committee is identifying and highlighting existing projects that embody the plenary theme. Participating projects, selected for their promise to create either new knowledge or new technologies associated with community remote sensing, are highlighted here on the website (see links in table below). Progress is being tracked throughout the year, and results will be presented during the IGARSS 2010 plenary session. Plenary speakers will be selected from major organizations that reflect public sector, private sector, academia, and NGO perspectives on community remote sensing.

Friday, September 18, 2009

CERN launches citzen cyber-infrastructure project

http://www.unitar.org/citizen_cyberscience_centre_project

UNITAR, UNIGE and CERN Collaborate on a Citizen Cyberscience Centre

The United Nations Institute for Training and Research, UNITAR, the University of Geneva, UNIGE, and the European Organization for Nuclear Research, CERN (hereafter referred to collectively as "the Partners") have formally agreed to collaborate on a Citizen Cyberscience Centre Project.

Citizen Cyberscience
The Partners have a common interest in, and experience of, developing Citizen Cyberscience applications for humanitarian and fundamental research.

Citizen Cyberscience provides scientists with an inexpensive form of distributed computing power that is complementary to Grid technology. This is especially true for processing-intensive problems, as illustrated by the LHC@home project developed by CERN and partners for Large Hadron Collider beam studies.

[...]

The areas of collaboration include:


* use of Citizen Cyberscience to help local authorities and humanitarian workers in developing regions to use earth imagery acquired from space for emergency response and improved territorial planning and management, including disaster risk reduction and adaptation to climate change;
* use of Citizen Cyberscience to help scientists discover new drugs for infectious tropical or neglected diseases using computer-aided screening of potential drug compounds, as well as to predict the impact of using such drugs in large-scale epidemiological simulations.
* use of Citizen Cyberscience to enable scientists in developing countries with limited resources to contribute in meaningful ways to international collaborations in fundamental science, such as particle physics and astrophysics.

Wednesday, June 24, 2009

The age of Citizen cyber-infrastructure

[For more examples of citizen cyber-infrastructure please see http://citizen-science.blogspot.com/. Some excerpts from iSGTW--BSA]
http://www.isgtw.org/?pid=1001877
Opinion - The age of citizen cyberspace
________________________________________

Using LHC@home, particle beam dynamics can be studied with volunteer computing. Image courtesy CERN
(François Grey, one of the key people behind the founding of the present-day iSGTW and a frequent contributor to these pages, argues that with volunteer computing, we are about to embark upon a new era of “citizen science.”)

….PrimeGrid, is tackling a host of numerical challenges, such as finding the longest arithmetic progression of prime numbers (the current record is 25). Professional mathematicians now eagerly collaborate with Rytis to analyze the gems that his volunteers dig up. Yet he funds his project by selling PrimeGrid mugs and t-shirts. In short, Rytis and his online volunteers are a web-enabled version of a venerable tradition: they are “citizen scientists.”
There are nearly 100 science projects using such volunteer computing. Like PrimeGrid, most are based on an open-source software platform called BOINC (see 15 October 2008 iSGTW, “Reaching for the Exa-scale”) with volunteer computing. Many address topical themes, such as modelling climate change with ClimatePrediction.net), developing drugs for AIDS with FightAids@home, or simulating the spread of malaria with MalariaControl.net. (See 7 May 2008 iSGTW, “WISDOM unplugged: Malaria drug-leads graduate to the wet lab”)

Fundamental science projects are also well represented. Einstein@Home (iSGTW 14 May 2008) analyzes data from gravitational wave detectors, MilkyWay@Home simulates galactic evolution, and LHC@home studies accelerator beam dynamics. Each of these projects has easily attracted tens of thousands of volunteers.

[..]
A new wave of online science projects, which can be described as “volunteer thinking,” takes the idea of participative science to a higher level. A popular example is the project GalaxyZoo, where volunteers can classify images of galaxies from the Sloan Digital Sky Survey as either elliptical or spiral, via a simple web interface. In a matter of months, some 100,000 volunteers classified more than 1 million galaxies. People do this sort of pattern recognition more accurately than any computer algorithm. And by asking many volunteers to classify the same image, their statistical average proves to be more accurate than even a professional astronomer.

[..]
Going one step farther in interactivity, the project Foldit is an online game that scores a player’s ability to fold a protein molecule into a minimal-energy structure. Through a nifty web interface, players can shake, wiggle and stretch different parts of the molecule. Again, people are often much faster at this task than computers, because of their aptitude to reason in three dimensions. And the best protein folders are usually teenage gaming enthusiasts rather than trained biochemists.

Who can benefit from this web-based boom in citizen science? In my view, scientists in the developing world stand to gain most by effectively plugging in to philanthropic resources: the computers and brains of supportive citizens, primarily those in industrialized countries with the necessary equipment and leisure time. A project called Africa@home, which I've been involved in, has trained dozens of African scientists to use BOINC. Some are already developing new volunteer-thinking projects, and the first African BOINC server is running at the University of Cape Town.

A new initiative called Asia@home was launched last month with a workshop at Academia Sinica in Taipei and a seminar at the Institute of High Energy Physics in Beijing, to drum up interest in that region. Asia represents an enormous potential, in terms of both the numbers of people with internet access (more Chinese are now online than Americans) and the high levels of education and interest in science.

To encourage such initiatives further, CERN, the United Nations Institute for Training and Research and the University of Geneva will establish a Citizen Cyberscience Center on 2 July. This will help disseminate volunteer computing in the developing world and encourage new technical approaches. For example, as mobile phones become more powerful they, too, can surely be harnessed.
There are about one billion internet connections on the planet and three billion mobile phones. That represents a huge opportunity for citizen science.

Thursday, April 23, 2009

Free storage in the cloud for scientific datasets

[A number of cloud organizations are offering free hosting for open scientific datasets. If this trend continues to develop it will create a further impetus for “open” data which is a result of government funded research as well as the architecture of research networks and the need for large physical scientific computational facilities. One of the challenges facing researchers in the use of clouds or virtualization is the high cost of storage and the time it takes to ship large datasets over the network. Free storage and collocating large datasets with the computational cloud eliminates both challenges. Here are some pointers to initiatives in this area. Thanks to Richard Ackerman’s blog for this pointer – BSA]


Google provides free storage for datasets
http://www.dailybits.com/google-provides-free-storage-for-scientific-data/
Under Project Palimpsest, Google will be providing free storage and public access to large scientific data sets in what could be a major data organization challenge.
The storage would fill a major need for scientists who want to openly share their data, and would allow citizen scientists access to an unprecedented amount of data to explore. For example, two planned datasets are all 120 terabytes of Hubble Space Telescope data and the images from the Archimedes Palimpsest, the 10th century manuscript that inspired the Google dataset storage project.
The challenge would be in the ways in which Google is able to represent the data to the public. Also, the Trendanalyzer acquisition would come really handy here. The data source is open to the public which means that additions can be made to it as well.
There is also a presentation available at SearchEngineJournal on the talk delivered last May. And if you have huge datasets that just won’t get uploaded, Google is providing 3TB disk arrays for shipping them whole file system for the dataset.
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Talis Connected Commons
http://scilib.typepad.com/science_library_pad/
Talis Connected Commons is about fostering the Linked Data community, by providing a rich hosting service:
For qualifying data sets, Talis will provide, through the Talis Platform:
• Free hosting of up to 50 million RDF triples and 10Gb of content
• Access to data access services that operate on that data, including data retrieval and text search
• Free access to a public SPARQL endpoint for each dataset.
I asked Leigh how this fits with the Talis Project Xiphos initiative, and he explained that Xiphos is a more focussed initiative around "data in the education, library and publishing sectors", whereas Connected Commons is about any kind of data.
Talis, like Amazon, understands that a modern business is about fostering an ecosystem, a combination of shared data and services that can be used as a platform for software development and business development.
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Amazon Public Datasets service

http://aws.amazon.com/publicdatasets/
Public Data Sets on AWS provides a centralized repository of public data sets that can be seamlessly integrated into AWS cloud-based applications. AWS is hosting the public data sets at no charge for the community, and like all AWS services, users pay only for the compute and storage they use for their own applications.
Previously, large data sets such as the mapping of the Human Genome and the US Census data required hours or days to locate, download, customize, and analyze. Now, anyone can access these data sets from their Amazon Elastic Compute Cloud (Amazon EC2) instances and start computing on the data within minutes. Users can also leverage the entire AWS ecosystem and easily collaborate with other AWS users. For example, users can produce or use prebuilt server images with tools and applications to analyze the data sets. Users can also discuss best practices and solutions in the dedicated Public Data Sets forum.
By hosting this important and useful data with cost-efficient services such as Amazon EC2, AWS hopes to provide researchers across a variety of disciplines and industries with tools to enable more innovation, more quickly.

Thursday, March 19, 2009

Citizen Science - how you can make a contribution to study of climate change

[From Climate Progress - “the indispensable blog” — Tom Friedman, New York Times –BSA]

http://climateprogress.org/2009/03/19/so-you-want-to-be-a-citizen-scientist/

[..]
Online social networking is no longer just about tagging a picture of your dog on Facebook or announcing to the world what you’re having for dinner on Twitter. Scientific institutions worldwide are beginning to harness the power of online social networking for scientific research. Online communities are an ideal vehicle for matching professional scientists with armies of enthusiastic amateurs. This corps of citizen scientists has the capacity to capture far more data over a vastly expanded geographical spectrum than professional scientists can on their own.
The USA National Phenology Network is one organization that is reaching out to citizen scientists via the Internet. People have used phenology, the study of the timing of lifecycle events of plants and animals, to detect the signs of spring since the early 18th century. The rising threat posed by global warming has spurred scientists to put phenology to another use: to detect the signs of climate change.
Plants and animals are very sensitive to even the smallest changes in their climates. Shifts in the timing of their lifecycle events can therefore be an important indicator in the study of climate change and its effects. Slight changes can have huge repercussions; mutual relationships between species and even entire systems can begin to fall apart.
USA-NPN is asking people across the country to record the phenology of their local flora and then report it online. Amateur hikers and photographers can also participate in NPN’s Project Budburst. They are asked to identify the phenological stage of the flowers and plants they see using information provided by the project’s website. The participants record the location, longitude, and latitude of what they observe. Eventually, Project Budburst will use this information to include real-time mapping with Google maps.
Relying on anonymous volunteers to collect data that will be entered into important scientific databases certainly raises questions about the reliability of the information gathered. Yet it turns out that most of the data is remarkably accurate, and researchers do perform checks on anomalous data. What’s more, the large pool of samples collected by a large group of volunteers diminishes the impact of any faulty data.
This creative new use for social networking also answers critics’ accusations about the frivolity of Facebook, Twitter, and other sites with proof that online networking has the potential to mobilize users to actively participate in innovative programs. Jack Weltzin, executive director of NPN, has said that in the future NPN hopes to make it possible for people to submit their findings via Twitter. NPN, a nonprofit organization, also hopes that iPhone and Facebook applications might be created to more easily facilitate volunteer participation.
Climate change scientists are not the only members of the scientific profession to tap into the potential of these online communities. In addition to tracking climate change, the information participants collect can help scientists predict wildfires and pollen production and monitor droughts as well as detect and control invasive species. Other online projects, such as “The Great World Wide Star Count,” rely on volunteer participation to gauge the level of light pollution across the globe. Several websites are also dedicated to tracking the migratory and breeding patterns of animals such as birds, frogs, and butterflies. All of these observations will augment the databases available to scientists attempting to understand annual fluctuations.